MochiView | Tool name | MochiView |
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| URL | http://johnsonlab.ucsf.edu/sj/mochiview-start/ |
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| Important features | 1. MochiView is Java software that integrates browsing of genomic sequences, features, and data with DNA motif visualization and analysis.
2. It is a highly flexible and intuitive interface that allows one to easily import, visualize, explore, and analyze large sets of data, such as those generated from ChIP experiments.
3. MochiView uses an integrated local database to manage all of the data imported by the user, such as genome sequences and alignments, gene locations, microarray probe locations, expression data, ChIP data, and motif libraries. |
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| Citations | Homann OR, Johnson AD. MochiView: versatile software for genome browsing and
DNA motif analysis. BMC Biol. 2010 Apr 21;8:49. PubMed PMID: 20409324; PubMed
Central PMCID: PMC2867778. |
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Comments | Requires installation of Bowtie, SAMTools, TopHat, polyHap2 in the path. |
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| Function | Visualization, ChIP seq analysis, RNA seq analysis |
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| Category | Free, Downloadable |
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| Input file format | FASTQ, FASTA, GTF |
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| Output file format | FASTA |
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| Operating system | Windows XP, Windows Vista, Linux (Ubuntu 7.10 and 8.04), and Mac OSx 10.5. |
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| Operating language | Java |
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